Pituitary colonization model — future paper/case study (memory #4)
Document D — substance effects on biochemical computer, starting with glyphosate + dicamba  + pthalates (memory #6)
Paper B additions — dysentery resistance, smoking vs. consuming, GPR84 MCFA, gut microbiome as toolkit, circadian clock loss, Rogers et al. 2026 §10.5 (memory #8)
Paper B — prolactin surge as host-side co-evolution evidence (memory #9)
Autoimmune standalone paper — Nicola et al. 2026, PD-L1/HVEM collateral damage mechanism (memory #11)


Fix truncated sentence in Reddit CHS post
Verify Reddit post DOIs resolve correctly
Fix all instances of "Nile et al., 2018" to "Nile et al., 2019" across all papers
Fix lemon balm bracket in PD paper from "Nile et al., 2018" to "Nile et al., 2019"
Add Prediction O6 to obesity paper: GLP-1 ancillary effects disproportionate to weight loss
Add exercise layer (Layer 3) to umbrella paper, renumber duration to Layer 4
Add Focal Infections 2.0 cross-reference to umbrella paper cross-domain section
Add version conflict definition to umbrella paper
Add colonization density measurement caveat paragraph to umbrella paper
Add Gutierrez and Vazquez (2001) heat treatment reference to AN paper
Add Gutierrez et al. (2018) hyperactivity/warming reference to AN paper
Add Gc et al. (2023) farnesol/GABA-A reference to AN paper
Add Craddock (2025) reference to AN paper
Add Kennedy et al. (2003) lemon balm citation to PD and AN papers
Add garlic/low-FODMAP tension note to IBS paper
Upload umbrella to Zenodo first, get DOI, then upload five condition papers
Edit umbrella Zenodo record after all six are live to add condition paper DOIs
Set Zenodo related identifiers: condition papers "isSupplementTo" A and B, "isPartOf" umbrella
Circadian clock loss section for Paper B
Prolactin/bidirectional coevolution section for Paper B
Christoph Thaiss outreach email
Document D — glyphosate/dicamba substance effects paper
Autoimmune paper: Nicola et al. 2026 PD-L1/HVEM — standalone
Pituitary colonization model (future paper)
Christoph Thaiss outreach email (Claude drafts first, under 300 words, both Zenodo DOIs)
Tearing up without warning — mechanism investigation
Paper B queued additions: dysentery resistance, smoking vs. consuming, GPR84/Thaiss, gut microbiome as toolkit, circadian clock outsourcing, prolactin surge post-orgasm, §8 discipline paragraph
Predictions 11 & 12 for Paper A v1.2 (VOC profiling, glucose bolus subroutine termination)
Autoimmune disease as collateral — standalone paper (Nicola et al. 2026 PD-L1/HVEM + somatic mutations April 2026)
Ideal symbiont from genetic perspective (mutual kill switch) — verify location of completed work
Paper B note: osmolality → ADH → pituitary throughput loop
Paper B note: circadian clock reframed as outsourcing (Salichos & Rokas 2010)
Paper A §5 + Paper B: Madhu et al. 2026 EV-mediated CNS modulation
Paper A: Cell vaults (Rome 1980) as the host-side docking and distribution hardware that completes the EV delivery circuit described in Paper B §5.5b. The "function unknown" status of vaults in mainstream biology becomes, under the framework, "function obscured by not knowing what the cargo is."